HL_3J9Y_057

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

3J9Y|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_057 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1098

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3J9Y|1|A|U|2404
3J9Y|1|A|G|2405
3J9Y|1|A|A|2406
3J9Y|1|A|A|2407
3J9Y|1|A|U|2408
3J9Y|1|A|G|2409
3J9Y|1|A|G|2410
3J9Y|1|A|A|2411
3J9Y|1|A|A|2412
3J9Y|1|A|G|2413

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15