Motif HL_53454.2 Version HL_53454.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_192 | 5J7L | 0.1956 | 1 | DA | LSU rRNA | U | 2404 | G | 2405 | A | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
| 2 | HL_9DFE_057 | 9DFE | 0.1739 | 1 | 1A | LSU rRNA | C | 2404 | G | 2405 | G | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
| 3 | HL_4WF9_055 | 4WF9 | 0.1526 | 1 | X | LSU rRNA | C | 2431 | G | 2432 | A | 2434 | U | 2435 | G | 2436 | G | 2437 | A | 2438 | A | 2439 | G | 2440 | cWW | tSH |
| 4 | HL_7A0S_058 | 7A0S | 0.0000 | 1 | X | LSU rRNA | C | 2383 | G | 2384 | G | 2386 | U | 2387 | G | 2388 | G | 2389 | A | 2390 | A | 2391 | G | 2392 | cWW | tSH |
| 5 | HL_7KGA_004 | 7KGA | 0.5087 | 3 | B | Flavivirus DB element | U | 53 | A | 54 | G | 57 | G | 58 | U | 59 | U | 60 | G | 62 | A | 63 | G | 64 | cWW | tSH |
| 6 | HL_7KGA_002 | 7KGA | 0.5781 | 3 | A | Flavivirus DB element | U | 53 | A | 54 | G | 57 | G | 58 | U | 59 | A | 61 | G | 62 | A | 63 | G | 64 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGUGGAAG | 2 |
| UAUCGGUUAGAG | 2 |
| UGAAUGGAAG | 1 |
| CGCAUGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGUGGAA | 2 |
| AUCGGUUAGA | 2 |
| GAAUGGAA | 1 |
| GCAUGGAA | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Heat map statistics
- Min 0.13 | Avg 0.32 | Max 0.64
Coloring options: