HL_3J9Y_062

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_062 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.1181

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

3J9Y|1|A|C|2658
3J9Y|1|A|G|2659
3J9Y|1|A|A|2660
3J9Y|1|A|G|2661
3J9Y|1|A|A|2662
3J9Y|1|A|G|2663

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain w

Tetracycline resistance protein TetM