HL_3J9Y_064

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3J9Y|1|A|G|2751, 3J9Y|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.089

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3J9Y|1|A|C|2745
3J9Y|1|A|U|2746
3J9Y|1|A|G|2747
3J9Y|1|A|A|2748
3J9Y|1|A|A|2749
3J9Y|1|A|A|2750
3J9Y|1|A|G|2751
3J9Y|1|A|C|2752
3J9Y|1|A|A|2753
3J9Y|1|A|U|2754
3J9Y|1|A|C|2755
3J9Y|1|A|U|2756
3J9Y|1|A|A|2757
3J9Y|1|A|A|2758
3J9Y|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13