HL_3J9Y_072
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGGAAACG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9Y_072 not in the Motif Atlas
- Homologous match to HL_6CZR_215
- Geometric discrepancy: 0.3928
- The information below is about HL_6CZR_215
- Detailed Annotation
- GNRA with near cWW
- Broad Annotation
- GNRA with near cWW
- Motif group
- HL_82182.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
3J9Y|1|a|U|157
3J9Y|1|a|G|158
3J9Y|1|a|G|159
3J9Y|1|a|A|160
3J9Y|1|a|A|161
3J9Y|1|a|A|162
3J9Y|1|a|C|163
3J9Y|1|a|G|164
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain P
- 50S ribosomal protein L19
- Chain t
- 30S ribosomal protein S20
Coloring options: