HL_3J9Y_074

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

3J9Y|1|a|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_074 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3411

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

3J9Y|1|a|C|206
3J9Y|1|a|C|207
3J9Y|1|a|U|208
3J9Y|1|a|U|209
3J9Y|1|a|C|210
3J9Y|1|a|G|211
3J9Y|1|a|G|212
3J9Y|1|a|G|213

Current chains

Chain a

16S ribosomal RNA

Nearby chains