HL_3J9Y_075

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

3J9Y|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_075 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0657

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3J9Y|1|a|G|259
3J9Y|1|a|G|260
3J9Y|1|a|U|261
3J9Y|1|a|A|262
3J9Y|1|a|A|263
3J9Y|1|a|C|264
3J9Y|1|a|G|265
3J9Y|1|a|G|266
3J9Y|1|a|C|267

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20