HL_3J9Y_077

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1263

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3J9Y|1|a|A|320
3J9Y|1|a|A|321
3J9Y|1|a|C|322
3J9Y|1|a|U|323
3J9Y|1|a|G|324
3J9Y|1|a|A|325
3J9Y|1|a|G|326
3J9Y|1|a|A|327
3J9Y|1|a|C|328
3J9Y|1|a|A|329
3J9Y|1|a|C|330
3J9Y|1|a|G|331
3J9Y|1|a|G|332
3J9Y|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20