HL_3J9Y_102
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9Y_102 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0864
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 50
Unit IDs
3J9Y|1|v|G|31
3J9Y|1|v|C|32
3J9Y|1|v|U|33
3J9Y|1|v|C|34
3J9Y|1|v|A|35
3J9Y|1|v|U|36
3J9Y|1|v|A|37
3J9Y|1|v|A|38
3J9Y|1|v|C|39
Current chains
- Chain v
- P-site fMet-tRNAfMet
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
- Chain x
- mRNA
Coloring options: