HL_3J9Z_017
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 3J9Z|1|LA|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9Z_017 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.4187
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
3J9Z|1|LA|U|566
3J9Z|1|LA|U|567
3J9Z|1|LA|U|568
3J9Z|1|LA|U|569
3J9Z|1|LA|G|570
3J9Z|1|LA|U|571
3J9Z|1|LA|A|572
3J9Z|1|LA|U|573
3J9Z|1|LA|A|574
3J9Z|1|LA|A|575
Current chains
- Chain LA
- 23S ribosomal RNA
Nearby chains
- Chain L1
- 50S ribosomal protein L32
- Chain LH
- 50S ribosomal protein L15
- Chain LO
- 50S ribosomal protein L20
- Chain LP
- 50S ribosomal protein L21
- Chain LX
- 50S ribosomal protein L3
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