Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J9Z_0481/LA/1910:1920No text annotation
homologous
HL_9DFE_046
HL_82185.1
HL_3J9Z_0541/LA/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_3J9Z_1071/SA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1

Problematic loops

#loop idProblemSequence
HL_3J9Z_001No text annotation
HL_3J9Z_002No text annotation
HL_3J9Z_003No text annotation
HL_3J9Z_004UNCG
HL_3J9Z_005No text annotation
HL_3J9Z_006No text annotation
HL_3J9Z_007No text annotation
HL_3J9Z_008No text annotation
HL_3J9Z_009T-loop with 2 stacked bulged bases
HL_3J9Z_010No text annotation
HL_3J9Z_011T-loop with unstacked turn
HL_3J9Z_012No text annotation
HL_3J9Z_112No text annotation
HL_3J9Z_013Pseudoknot geometry
HL_3J9Z_014GNRA
HL_3J9Z_015GNRA
HL_3J9Z_016No text annotation
HL_3J9Z_017T-loop with 2 stacked bulged bases
HL_3J9Z_018No text annotation
HL_3J9Z_019GNRA
HL_3J9Z_020No text annotation
HL_3J9Z_021GNRA wlth tandem sheared
HL_3J9Z_022No text annotation
HL_3J9Z_023No text annotation
HL_3J9Z_024No text annotation
HL_3J9Z_025No text annotation
HL_3J9Z_026GNRA with extra cWW
HL_3J9Z_113GNRA
HL_3J9Z_027No text annotation
HL_3J9Z_028No text annotation
HL_3J9Z_029No text annotation
HL_3J9Z_030No text annotation
HL_3J9Z_031GNRA
HL_3J9Z_032T-loop with 2 stacked bulged bases
HL_3J9Z_033Pseudoknot geometry with 3' bulge
HL_3J9Z_034GNRA
HL_3J9Z_035No text annotation
HL_3J9Z_036UNCG variation
HL_3J9Z_037No text annotation
HL_3J9Z_038UNCG
HL_3J9Z_039Mini UNCG
HL_3J9Z_040No text annotation
HL_3J9Z_041GNRA
HL_3J9Z_042UNCG
HL_3J9Z_043Mini UNCG
HL_3J9Z_044No text annotation
HL_3J9Z_045No text annotation
HL_3J9Z_046GNRA related
HL_3J9Z_047GNRA
HL_3J9Z_049No text annotation
HL_3J9Z_050No text annotation
HL_3J9Z_051No text annotation
HL_3J9Z_052No text annotation
HL_3J9Z_053No text annotation
HL_3J9Z_055No text annotation
HL_3J9Z_056Pseudoknot geometry
HL_3J9Z_057GNRA
HL_3J9Z_058GNRA
HL_3J9Z_059No text annotation
HL_3J9Z_060No text annotation
HL_3J9Z_061GNRA variation
HL_3J9Z_062No text annotation
HL_3J9Z_063GNRA
HL_3J9Z_064GNRA related
HL_3J9Z_065Ribsomal LSU H95
HL_3J9Z_066No text annotation
HL_3J9Z_067No text annotation
HL_3J9Z_068No text annotation
HL_3J9Z_069GNRA
HL_3J9Z_070No text annotation
HL_3J9Z_071UNCG variation
HL_3J9Z_110Mini UNCG
HL_3J9Z_072No text annotation
HL_3J9Z_073tRNA anticodon loop
HL_3J9Z_074T-loop with 2 stacked bulged bases
HL_3J9Z_075No text annotation
HL_3J9Z_076tRNA anticodon loop with synthetase
HL_3J9Z_111No text annotation
HL_3J9Z_077No text annotation
HL_3J9Z_078No text annotation
HL_3J9Z_079No text annotation
HL_3J9Z_114No text annotation
HL_3J9Z_080GNRA
HL_3J9Z_081GNRA
HL_3J9Z_082No text annotation
HL_3J9Z_083GNRA related
HL_3J9Z_084GNRA
HL_3J9Z_085No text annotation
HL_3J9Z_086UNCG
HL_3J9Z_087GNRA
HL_3J9Z_088UNCG
HL_3J9Z_089GNRA-like with tWH
HL_3J9Z_090No text annotation
HL_3J9Z_091GNRA-like with tWH
HL_3J9Z_092No text annotation
HL_3J9Z_093GNRA
HL_3J9Z_094No text annotation
HL_3J9Z_095No text annotation
HL_3J9Z_096GNRA
HL_3J9Z_097GNRA
HL_3J9Z_098tRNA D-loop
HL_3J9Z_115No text annotation
HL_3J9Z_099GNRA
HL_3J9Z_100UNCG
HL_3J9Z_101GNRA
HL_3J9Z_102T-loop related
HL_3J9Z_103No text annotation
HL_3J9Z_104GNRA
HL_3J9Z_105GNRA
HL_3J9Z_106T-loop with 3 stacked bulged bases
HL_3J9Z_108UNCG
HL_3J9Z_109GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J9Z_0341/LA/994:996,
1/LA/1159:1160
Single bulged C
homologous
IL_7A0S_032
IL_05642.2
IL_3J9Z_0391/LA/1024:1030,
1/LA/1124:1140
No text annotation
geometric
IL_5J7L_281
NA
IL_3J9Z_1011/LA/2591:2592,
1/LA/2601:2603
Single bulged A
homologous
IL_5J7L_344
NA
IL_3J9Z_1151/LB/34:38,
1/LB/44:48
Symmetric double minor groove platform
geometric
IL_4V9F_104
IL_58103.12
IL_3J9Z_1601/SA/953:954,
1/SA/1226:1228
Minor groove platform
homologous
IL_4LFB_038
IL_34520.2
IL_3J9Z_1621/SA/998:999,
1/SA/1041:1043
Single stack bend
homologous
IL_5J7L_044
NA

Problematic loops

#loop idProblemSequence
IL_3J9Z_182No text annotation
IL_3J9Z_001Triple sheared with non-canonical cWW
IL_3J9Z_002Single bulged A
IL_3J9Z_003Minor groove platform
IL_3J9Z_004No text annotation
IL_3J9Z_183No text annotation
IL_3J9Z_005Single stack bend
IL_3J9Z_184No text annotation
IL_3J9Z_0068x7 Sarcin-Ricin; G-bulge
IL_3J9Z_0077x6 Sarcin-Ricin; G-bulge
IL_3J9Z_008No text annotation
IL_3J9Z_009No text annotation
IL_3J9Z_010No text annotation
IL_3J9Z_185Tandem non-canonical cWW pairs
IL_3J9Z_011No text annotation
IL_3J9Z_012No text annotation
IL_3J9Z_013Double sheared
IL_3J9Z_014Isolated non-canonical cWW pair
IL_3J9Z_015AAA cross-strand stack
IL_3J9Z_016Isolated non-canonical cWW pair
IL_3J9Z_017tHW-tHW cross-strand stack
IL_3J9Z_018Single bulged A
IL_3J9Z_019Single bulged G
IL_3J9Z_020Triple sheared
IL_3J9Z_021Major groove platform
IL_3J9Z_022Multiple bulged bases
IL_3J9Z_023Single stack bend
IL_3J9Z_024Single stack bend
IL_3J9Z_025No text annotation
IL_3J9Z_026No text annotation
IL_3J9Z_206Single stack bend
IL_3J9Z_0277x7 Sarcin-Ricin with intercalated A; G-bulge
IL_3J9Z_028Minor groove platform
IL_3J9Z_029C-loop with bulged stacked A's
IL_3J9Z_030Isolated non-canonical cWW pair
IL_3J9Z_031No text annotation
IL_3J9Z_207No text annotation
IL_3J9Z_032Minor groove platform related
IL_3J9Z_033No text annotation
IL_3J9Z_035UAA/GAN
IL_3J9Z_036SSU/LSU pseudoknot
IL_3J9Z_037Single bulged U
IL_3J9Z_038Kink-turn related
IL_3J9Z_040Isolated non-canonical cWW pair
IL_3J9Z_041Tandem non-canonical cWW pairs
IL_3J9Z_042Kink-turn
IL_3J9Z_043No text annotation
IL_3J9Z_044Major groove platform
IL_3J9Z_186Partly complementary
IL_3J9Z_208No text annotation
IL_3J9Z_209Isolated cWS basepair
IL_3J9Z_187Tandem non-canonical cWW pairs
IL_3J9Z_045No text annotation
IL_3J9Z_188No text annotation
IL_3J9Z_046No text annotation
IL_3J9Z_047Kink-turn
IL_3J9Z_2108x7 Sarcin-Ricin; G-bulge
IL_3J9Z_0489x8 Sarcin-Ricin; G-bulge
IL_3J9Z_049Major groove platform; stack outside cWW
IL_3J9Z_050C-loop
IL_3J9Z_051UAA/GAN
IL_3J9Z_052tSH-tHW-tHS
IL_3J9Z_053No text annotation
IL_3J9Z_054UAA/GAN
IL_3J9Z_055No text annotation
IL_3J9Z_189Tandem non-canonical cWW pairs
IL_3J9Z_056tSH-tHW
IL_3J9Z_057No text annotation
IL_3J9Z_1907x7 Sarcin-Ricin with intercalated A; G-bulge
IL_3J9Z_211tSH-tHW-tHS
IL_3J9Z_058No text annotation
IL_3J9Z_059No text annotation
IL_3J9Z_212No text annotation
IL_3J9Z_060Single bulged A
IL_3J9Z_061UAA/GAN variation
IL_3J9Z_062No text annotation
IL_3J9Z_063Isolated tWW turn
IL_3J9Z_064Major groove platform; stack outside cWW
IL_3J9Z_191No text annotation
IL_3J9Z_065Intercalated tWH
IL_3J9Z_066tSH-tSH-tHH-tHS
IL_3J9Z_0676x5 Sarcin-Ricin; G-bulge
IL_3J9Z_068Triple sheared with non-canonical cWW
IL_3J9Z_069Single bulged C
IL_3J9Z_070Single bulged A
IL_3J9Z_071Kink-turn related
IL_3J9Z_072Minor groove platform, major groove intercalation
IL_3J9Z_073Major groove intercalation
IL_3J9Z_074Minor groove platform
IL_3J9Z_192No text annotation
IL_3J9Z_075UAA/GAN related
IL_3J9Z_076Bulged stacked bases
IL_3J9Z_077No text annotation
IL_3J9Z_078Major groove platform
IL_3J9Z_079No text annotation
IL_3J9Z_080Single bulged U
IL_3J9Z_081No text annotation
IL_3J9Z_082Isolated tHS basepair with bulges
IL_3J9Z_083Isolated non-canonical cWW pair
IL_3J9Z_084Isolated non-canonical cWW pair
IL_3J9Z_085Partly complementary
IL_3J9Z_213No text annotation
IL_3J9Z_086No text annotation
IL_3J9Z_087No text annotation
IL_3J9Z_193No text annotation
IL_3J9Z_088No text annotation
IL_3J9Z_214No text annotation
IL_3J9Z_089Single bulged U
IL_3J9Z_090Double sheared
IL_3J9Z_091No text annotation
IL_3J9Z_092Single stack bend
IL_3J9Z_194No text annotation
IL_3J9Z_093Major groove platform
IL_3J9Z_094Major groove platform
IL_3J9Z_095No text annotation
IL_3J9Z_096Double sheared with non-canonical cWW
IL_3J9Z_097Major groove platform
IL_3J9Z_098Isolated non-canonical cWW with bulges
IL_3J9Z_099No text annotation
IL_3J9Z_100No text annotation
IL_3J9Z_215Major groove platform with intercalation
IL_3J9Z_195Isolated non-canonical cWW pair
IL_3J9Z_102tSH-tHS-tHW
IL_3J9Z_103Sarcin-Ricin target in LSU H95; G-bulge
IL_3J9Z_104No text annotation
IL_3J9Z_196C-loop
IL_3J9Z_105UAA/GAN related, with intercalation
IL_3J9Z_106Multiple bulged bases
IL_3J9Z_107UAA/GAN with extra cWW
IL_3J9Z_108No text annotation
IL_3J9Z_197Isolated non-canonical cWW pair
IL_3J9Z_109Single bulged C
IL_3J9Z_110Multiple bulged bases with non-canonical cWW
IL_3J9Z_111No text annotation
IL_3J9Z_112Major groove intercalation
IL_3J9Z_113No text annotation
IL_3J9Z_114No text annotation
IL_3J9Z_116Bacterial 5S Loop E
IL_3J9Z_216Single bulged G
IL_3J9Z_117No text annotation
IL_3J9Z_118Single bulged A
IL_3J9Z_119No text annotation
IL_3J9Z_120Minor groove platform
IL_3J9Z_121Multiple bulged bases
IL_3J9Z_122Minor groove platform with extra cWW
IL_3J9Z_123Minor groove platform
IL_3J9Z_198Single bulged G
IL_3J9Z_124Single bulged G, near cWW
IL_3J9Z_125Isolated non-canonical cWW pair
IL_3J9Z_126No text annotation
IL_3J9Z_127Isolated cWH basepair
IL_3J9Z_128tWH-tWH-tHW-tHW
IL_3J9Z_129Minor groove platform
IL_3J9Z_130Kink-turn with non-sequential stacking
IL_3J9Z_217No text annotation
IL_3J9Z_199No text annotation
IL_3J9Z_131No text annotation
IL_3J9Z_132C-loop
IL_3J9Z_133Single bulged U
IL_3J9Z_218C-loop
IL_3J9Z_134C-loop with extra cWW pair
IL_3J9Z_219Single bulged G
IL_3J9Z_135No text annotation
IL_3J9Z_136No text annotation
IL_3J9Z_137tSH-tHW-tWW
IL_3J9Z_138No text annotation
IL_3J9Z_139Partly complementary
IL_3J9Z_220No text annotation
IL_3J9Z_140Single stack bend
IL_3J9Z_141SSU/LSU pseudoknot
IL_3J9Z_142Kink-turn related
IL_3J9Z_143No text annotation
IL_3J9Z_144tSH-tHW-tHS
IL_3J9Z_145Major groove platform
IL_3J9Z_200Major groove minor groove platform; mini C-loop
IL_3J9Z_1468-nt loop receptor
IL_3J9Z_147No text annotation
IL_3J9Z_148Major groove platform; stack outside cWW
IL_3J9Z_149Single stack bend
IL_3J9Z_150Tandem non-canonical cWW pairs
IL_3J9Z_151No text annotation
IL_3J9Z_152Kink-turn
IL_3J9Z_201Kink-turn
IL_3J9Z_153Left turn
IL_3J9Z_154tSH-tHW-tHS
IL_3J9Z_155Isolated cWS basepair
IL_3J9Z_1568x6 Sarcin-Ricin with inserted Y; G-bulge
IL_3J9Z_157Single bulged A
IL_3J9Z_158Single bulged G
IL_3J9Z_159Minor groove platform
IL_3J9Z_161Minor groove platform
IL_3J9Z_163No text annotation
IL_3J9Z_164Minor groove platform
IL_3J9Z_165Single bulged A
IL_3J9Z_166Isolated non-canonical cWW pair
IL_3J9Z_167No text annotation
IL_3J9Z_168Minor groove platform
IL_3J9Z_169No text annotation
IL_3J9Z_170No text annotation
IL_3J9Z_171180 degree turn
IL_3J9Z_172Double sheared with non-canonical cWW
IL_3J9Z_173No text annotation
IL_3J9Z_174No text annotation
IL_3J9Z_175No text annotation
IL_3J9Z_176No text annotation
IL_3J9Z_202Isolated non-canonical cWW pair
IL_3J9Z_177Tandem non-canonical cWW pairs
IL_3J9Z_178Double sheared
IL_3J9Z_203No text annotation
IL_3J9Z_179Triple sheared related
IL_3J9Z_180Single bulged A
IL_3J9Z_204No text annotation
IL_3J9Z_205No text annotation
IL_3J9Z_181No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J9Z_0101/LA/2295:2299,
1/LA/2317:2323,
1/LA/2332:2337
No text annotation
homologous
J3_5J7L_071
NA
J3_3J9Z_0341/LA/2517:2520,
1/LA/2545:2547,
1/LA/2561:2567
No text annotation
homologous
J3_5J7L_046
NA
J4_3J9Z_0171/S7/7:10,
1/S7/25:27,
1/S7/43:49,
1/S7/65:66
tRNA junction
homologous
J4_3TUP_001
J4_95067.1

Problematic loops

#loop idProblemSequence
J3_3J9Z_001No text annotation
J3_3J9Z_028No text annotation
J3_3J9Z_029No text annotation
J3_3J9Z_002No text annotation
J3_3J9Z_030No text annotation
J3_3J9Z_003No text annotation
J3_3J9Z_004No text annotation
J3_3J9Z_005No text annotation
J3_3J9Z_006No text annotation
J3_3J9Z_031No text annotation
J3_3J9Z_007No text annotation
J3_3J9Z_008No text annotation
J3_3J9Z_032No text annotation
J3_3J9Z_009Kink-turn 3-way junction
J3_3J9Z_033No text annotation
J3_3J9Z_011No text annotation
J3_3J9Z_012No text annotation
J3_3J9Z_013No text annotation
J3_3J9Z_014No text annotation
J3_3J9Z_015No text annotation
J3_3J9Z_035No text annotation
J3_3J9Z_016No text annotation
J3_3J9Z_036No text annotation
J3_3J9Z_017No text annotation
J3_3J9Z_018No text annotation
J3_3J9Z_019No text annotation
J3_3J9Z_020No text annotation
J3_3J9Z_021No text annotation
J3_3J9Z_022No text annotation
J3_3J9Z_037No text annotation
J3_3J9Z_023No text annotation
J3_3J9Z_024No text annotation
J3_3J9Z_025No text annotation
J3_3J9Z_026No text annotation
J3_3J9Z_038No text annotation
J3_3J9Z_027No text annotation
J4_3J9Z_001No text annotation
J4_3J9Z_002No text annotation
J4_3J9Z_003No text annotation
J4_3J9Z_004No text annotation
J4_3J9Z_005No text annotation
J4_3J9Z_006No text annotation
J4_3J9Z_007No text annotation
J4_3J9Z_008No text annotation
J4_3J9Z_009No text annotation
J4_3J9Z_010No text annotation
J4_3J9Z_011No text annotation
J4_3J9Z_012tRNA junction
J4_3J9Z_013No text annotation
J4_3J9Z_014No text annotation
J4_3J9Z_015No text annotation
J4_3J9Z_016No text annotation
J5_3J9Z_001No text annotation
J5_3J9Z_010No text annotation
J5_3J9Z_002No text annotation
J5_3J9Z_003No text annotation
J5_3J9Z_004No text annotation
J5_3J9Z_011No text annotation
J5_3J9Z_005No text annotation
J5_3J9Z_006No text annotation
J5_3J9Z_007No text annotation
J5_3J9Z_008No text annotation
J5_3J9Z_009No text annotation
J6_3J9Z_001No text annotation
J7_3J9Z_001No text annotation
J7_3J9Z_002No text annotation

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