HL_3J9Z_021

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_021 not in the Motif Atlas

Geometric match to HL_4WF9_004

Geometric discrepancy: 0.356

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3J9Z|1|LA|G|712
3J9Z|1|LA|G|713
3J9Z|1|LA|U|714
3J9Z|1|LA|A|715
3J9Z|1|LA|A|716
3J9Z|1|LA|C|717
3J9Z|1|LA|A|718
3J9Z|1|LA|C|719

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LN

50S ribosomal protein L2

Chain SA

Small subunit ribosomal RNA; SSU rRNA

Chain SO

30S ribosomal protein S15