HL_3J9Z_022

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

3J9Z|1|LA|U|747, 3J9Z|1|LA|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_022 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3045

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3J9Z|1|LA|U|744
3J9Z|1|LA|G|745
3J9Z|1|LA|U|746
3J9Z|1|LA|U|747
3J9Z|1|LA|G|748
3J9Z|1|LA|A|749
3J9Z|1|LA|A|750
3J9Z|1|LA|A|751
3J9Z|1|LA|A|752
3J9Z|1|LA|A|753

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L32

Chain L3

50S ribosomal protein L34

Chain L6

50S ribosomal protein L4

Chain LQ

50S ribosomal protein L22

Chain LX

50S ribosomal protein L3