HL_3J9Z_026

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

3J9Z|1|LA|U|958, 3J9Z|1|LA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_026 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3528

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|G|954
3J9Z|1|LA|U|955
3J9Z|1|LA|G|956
3J9Z|1|LA|C|957
3J9Z|1|LA|U|958
3J9Z|1|LA|A|959
3J9Z|1|LA|A|960
3J9Z|1|LA|C|961
3J9Z|1|LA|G|962
3J9Z|1|LA|U|963

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LI

50S ribosomal protein L16