HL_3J9Z_033

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

3J9Z|1|LA|U|1325, 3J9Z|1|LA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_033 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.2346

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3J9Z|1|LA|G|1324
3J9Z|1|LA|U|1325
3J9Z|1|LA|U|1326
3J9Z|1|LA|A|1327
3J9Z|1|LA|A|1328
3J9Z|1|LA|U|1329
3J9Z|1|LA|C|1330

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LJ

50S ribosomal protein L17

Chain LQ

50S ribosomal protein L22