3D structure

PDB id
3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CGACACUG
Length
8 nucleotides
Bulged bases
3J9Z|1|LA|A|1614, 3J9Z|1|LA|A|1616, 3J9Z|1|LA|U|1618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J9Z_040 not in the Motif Atlas
Homologous match to HL_7A0S_040
Geometric discrepancy: 0.1036
The information below is about HL_7A0S_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

3J9Z|1|LA|C|1612
3J9Z|1|LA|G|1613
3J9Z|1|LA|A|1614
3J9Z|1|LA|C|1615
3J9Z|1|LA|A|1616
3J9Z|1|LA|C|1617
3J9Z|1|LA|U|1618
3J9Z|1|LA|G|1619

Current chains

Chain LA
23S ribosomal RNA

Nearby chains

Chain L3
50S ribosomal protein L34
Chain LQ
50S ribosomal protein L22

Coloring options:


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