HL_3J9Z_049

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

3J9Z|1|LA|A|1952, 3J9Z|1|LA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_049 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1427

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

3J9Z|1|LA|G|1949
3J9Z|1|LA|G|1950
3J9Z|1|LA|U|1951
3J9Z|1|LA|A|1952
3J9Z|1|LA|A|1953
3J9Z|1|LA|G|1954
3J9Z|1|LA|U|1955
3J9Z|1|LA|U|1956
3J9Z|1|LA|C|1957

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LG

50S ribosomal protein L14

Chain SA

Small subunit ribosomal RNA; SSU rRNA