HL_3J9Z_071

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

3J9Z|1|LB|U|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_071 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3384

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3J9Z|1|LB|G|85
3J9Z|1|LB|G|86
3J9Z|1|LB|U|87
3J9Z|1|LB|C|88
3J9Z|1|LB|U|89
3J9Z|1|LB|C|90
3J9Z|1|LB|C|91

Current chains

Chain LB

5S ribosomal RNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LI

50S ribosomal protein L16

Chain LT

50S ribosomal protein L25