HL_3J9Z_074
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9Z_074 not in the Motif Atlas
- Homologous match to HL_6UFM_003
- Geometric discrepancy: 0.1347
- The information below is about HL_6UFM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
3J9Z|1|S6|G|54
3J9Z|1|S6|U|55
3J9Z|1|S6|U|56
3J9Z|1|S6|C|57
3J9Z|1|S6|A|58
3J9Z|1|S6|A|59
3J9Z|1|S6|A|60
3J9Z|1|S6|U|61
3J9Z|1|S6|C|62
Current chains
- Chain S6
- P-tRNA
Nearby chains
- Chain L7
- 50S ribosomal protein L5
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 50S ribosomal protein L16
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