HL_3JA1_003

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

3JA1|1|LA|A|125, 3JA1|1|LA|A|126, 3JA1|1|LA|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1749

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JA1|1|LA|G|123
3JA1|1|LA|G|124
3JA1|1|LA|A|125
3JA1|1|LA|A|126
3JA1|1|LA|A|127
3JA1|1|LA|C|128

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34

Chain LV

50S ribosomal protein L23