RNA 3D Hub //

3JA1 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3JA1_0011/LA/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_93438.2
HL_3JA1_0021/LA/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_3JA1_0031/LA/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_3JA1_0041/LA/137:142UNCG
geometric
HL_5J7L_171
HL_34617.5
HL_3JA1_0051/LA/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_3JA1_0061/LA/194:201No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_3JA1_0071/LA/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_3JA1_0081/LA/246:252No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_3JA1_0091/LA/305:312T-loop with 2 stacked bulged bases
homologous
HL_4WF9_010
HL_01609.3
HL_3JA1_0101/LA/319:323No text annotation
homologous
HL_7A0S_011
HL_75660.5
HL_3JA1_0111/LA/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_3JA1_1111/LA/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_3JA1_0131/LA/410:417Pseudoknot geometry
homologous
HL_4WF9_014
HL_30680.3
HL_3JA1_0141/LA/462:467GNRA
homologous
HL_4WF9_015
HL_37824.8
HL_3JA1_0151/LA/487:493GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_3JA1_0161/LA/543:550No text annotation
HL_3JA1_0171/LA/566:575No text annotation
HL_3JA1_0181/LA/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_3JA1_0191/LA/629:634GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_3JA1_1121/LA/641:647No text annotation
HL_3JA1_0211/LA/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_3JA1_0221/LA/744:753No text annotation
homologous
HL_7A0S_022
HL_88205.2
HL_3JA1_0231/LA/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_3JA1_0241/LA/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_3JA1_0251/LA/885:891No text annotation
HL_3JA1_0261/LA/954:963tRNA anticodon loop
geometric
HL_3RG5_006
HL_04259.3
HL_3JA1_0271/LA/978:985No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_3JA1_0281/LA/1064:1074No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_3JA1_0291/LA/1092:1099No text annotation
HL_3JA1_0301/LA/1172:1177Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_3JA1_0311/LA/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.8
HL_3JA1_0321/LA/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_3JA1_0331/LA/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_3JA1_0341/LA/1363:1368GNRA
homologous
HL_7RQB_035
NA
HL_3JA1_0351/LA/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_3JA1_0361/LA/1450:1461Mini UNCG
geometric
HL_4V9F_021
HL_48778.2
HL_3JA1_0371/LA/1492:1498No text annotation
homologous
HL_7RQB_038
NA
HL_3JA1_0381/LA/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_3JA1_0391/LA/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_3JA1_0401/LA/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_3JA1_0411/LA/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_3JA1_0421/LA/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_3JA1_0431/LA/1728:1731No text annotation
homologous
HL_5J7L_176
HL_32346.4
HL_3JA1_0441/LA/1752:1756No text annotation
homologous
HL_4WF9_042
HL_80709.3
HL_3JA1_0451/LA/1777:1787No text annotation
homologous
HL_7RQB_045
NA
HL_3JA1_0461/LA/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_3JA1_0471/LA/1868:1873GNRA
geometric
HL_4KQY_002
HL_37824.8
HL_3JA1_0481/LA/1910:1920No text annotation
homologous
HL_9DFE_046
HL_25847.2
HL_3JA1_0491/LA/1949:1957No text annotation
homologous
HL_4WF9_046
HL_20167.2
HL_3JA1_0501/LA/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.3
HL_3JA1_0511/LA/2142:2149No text annotation
homologous
HL_5J7L_184
NA
HL_3JA1_0521/LA/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_3JA1_1131/LA/2248:2256No text annotation
homologous
HL_9DFE_051
HL_85367.2
HL_3JA1_0541/LA/2264:2276No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_3JA1_0551/LA/2303:2313No text annotation
geometric
HL_7KI3_001
HL_75660.5
HL_3JA1_0561/LA/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_3JA1_1091/LA/2354:2363No text annotation
geometric
HL_8KAL_008
NA
HL_3JA1_0571/LA/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.8
HL_3JA1_0581/LA/2374:2379GNRA
homologous
HL_7A0S_057
HL_37824.8
HL_3JA1_0591/LA/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_3JA1_1141/LA/2471:2479No text annotation
homologous
HL_5J7L_193
HL_32735.2
HL_3JA1_0611/LA/2528:2535No text annotation
homologous
HL_5J7L_194
HL_31585.4
HL_3JA1_0621/LA/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_3JA1_0631/LA/2594:2599GNRA
homologous
HL_7A0S_062
HL_37824.8
HL_3JA1_0641/LA/2658:2663GNRA
geometric
HL_5J7L_152
HL_37824.8
HL_3JA1_1151/LA/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_3JA1_0661/LA/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_3JA1_0671/LA/2796:2800Mini UNCG
geometric
HL_4V88_192
NA
HL_3JA1_0681/LA/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_3JA1_0691/LA/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.8
HL_3JA1_0701/LB/38:44No text annotation
homologous
HL_7RQB_070
NA
HL_3JA1_1161/LB/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_3JA1_0721/S2/13:23No text annotation
homologous
HL_4YYE_001
NA
HL_3JA1_0731/S2/32:40tRNA anticodon loop
homologous
HL_4TUE_034
HL_06059.7
HL_3JA1_0741/S2/54:62T-loop with 2 stacked bulged bases
homologous
HL_3AMU_003
HL_28252.9
HL_3JA1_1101/SA/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_3JA1_1171/SA/83:86No text annotation
HL_3JA1_0771/SA/158:163GNRA
homologous
HL_5J7L_003
HL_37824.8
HL_3JA1_0781/SA/186:191GNRA
homologous
HL_5J7L_004
HL_37824.8
HL_3JA1_0791/SA/207:212No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_3JA1_0801/SA/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_3JA1_0811/SA/296:301GNRA
homologous
HL_4LFB_007
HL_37824.8
HL_3JA1_0821/SA/320:333No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_3JA1_0831/SA/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_3JA1_0841/SA/379:384GNRA
homologous
HL_5J7L_010
HL_37824.8
HL_3JA1_0851/SA/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_3JA1_0861/SA/462:470No text annotation
HL_3JA1_0871/SA/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_3JA1_0881/SA/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_3JA1_0891/SA/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_3JA1_0901/SA/726:731GNRA
homologous
HL_5J7L_016
HL_37824.8
HL_3JA1_0911/SA/786:796T-loop
geometric
HL_6GSK_204
HL_20535.2
HL_3JA1_0921/SA/840:846No text annotation
HL_3JA1_0931/SA/862:867GNRA
homologous
HL_5J7L_019
HL_37824.8
HL_3JA1_0941/SA/897:902GNRA
homologous
HL_6CZR_091
NA
HL_3JA1_0951/SA/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_3JA1_0961/SA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.8
HL_3JA1_0971/SA/1028:1033No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_3JA1_0981/SA/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.8
HL_3JA1_0991/SA/1089:1096T-loop related
homologous
HL_5J7L_024
HL_77436.5
HL_3JA1_1001/SA/1134:1140No text annotation
homologous
HL_4LFB_026
HL_87954.2
HL_3JA1_1011/SA/1165:1171GNRA
homologous
HL_5J7L_026
HL_93535.1
HL_3JA1_1021/SA/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.8
HL_3JA1_1031/SA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_3JA1_1041/SA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_3JA1_1051/SA/1449:1454No text annotation
HL_3JA1_1061/SA/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.8

Problematic loops

#loop idProblemSequence
HL_3JA1_107tRNA anticodon loop
HL_3JA1_012No text annotation
HL_3JA1_020No text annotation
HL_3JA1_053No text annotation
HL_3JA1_108No text annotation
HL_3JA1_060No text annotation
HL_3JA1_065No text annotation
HL_3JA1_071No text annotation
HL_3JA1_075No text annotation
HL_3JA1_076No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3JA1_0011/LA/24:30,
1/LA/510:516		Triple sheared with non-canonical cWW
homologous
IL_7A0S_001
IL_04021.2
IL_3JA1_0021/LA/36:37,
1/LA/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_3JA1_0031/LA/43:44,
1/LA/434:436		Minor groove platform
homologous
IL_7RQB_003
NA
IL_3JA1_0041/LA/81:85,
1/LA/97:105		No text annotation
homologous
IL_9DFE_004
IL_01488.3
IL_3JA1_0051/LA/183:184,
1/LA/212:214		Single stack bend
homologous
IL_4WF9_007
IL_90729.1
IL_3JA1_0061/LA/188:194,
1/LA/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_3JA1_0071/LA/239:245,
1/LA/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_3JA1_0081/LA/269:271,
1/LA/366:370		No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_3JA1_0091/LA/274:281,
1/LA/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_3JA1_0101/LA/293:295,
1/LA/343:347		No text annotation
homologous
IL_4WF9_014
IL_69440.3
IL_3JA1_0111/LA/481:484,
1/LA/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_3JA1_0121/LA/536:539,
1/LA/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_3JA1_0131/LA/564:566,
1/LA/575:577		Isolated non-canonical cWW pair
homologous
IL_7A0S_011
IL_07785.1
IL_3JA1_0141/LA/606:610,
1/LA/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_3JA1_0151/LA/672:674,
1/LA/806:808		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_87907.2
IL_3JA1_0161/LA/674:678,
1/LA/799:806		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
IL_54041.2
IL_3JA1_0171/LA/697:698,
1/LA/763:765		Single bulged A
homologous
IL_5J7L_261
IL_31462.7
IL_3JA1_0181/LA/702:703,
1/LA/728:730		Single bulged G
geometric
IL_4V9F_026
IL_00225.14
IL_3JA1_0191/LA/703:707,
1/LA/724:728		Triple sheared
homologous
IL_4WF9_024
IL_50730.2
IL_3JA1_0201/LA/738:740,
1/LA/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_3JA1_0211/LA/775:777,
1/LA/787:791		Multiple bulged bases
homologous
IL_7RQB_023
NA
IL_3JA1_0221/LA/843:845,
1/LA/934:935		Single stack bend
geometric
IL_5TBW_070
NA
IL_3JA1_0231/LA/845:848,
1/LA/930:934		No text annotation
IL_3JA1_2061/LA/850:851,
1/LA/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_3JA1_0251/LA/856:862,
1/LA/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_3JA1_0261/LA/862:863,
1/LA/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.14
IL_3JA1_2071/LA/864:868,
1/LA/909:912		C-loop
homologous
IL_5J7L_272
IL_26222.2
IL_3JA1_0281/LA/870:872,
1/LA/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_3JA1_0291/LA/875:879,
1/LA/898:902		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_3JA1_0301/LA/880:881,
1/LA/895:897		No text annotation
IL_3JA1_1821/LA/880:883,
1/LA/894:897		No text annotation
IL_3JA1_0311/LA/881:883,
1/LA/894:895		No text annotation
IL_3JA1_0321/LA/883:884,
1/LA/892:894		Minor groove platform
geometric
IL_5J7L_042
IL_51454.3
IL_3JA1_0331/LA/994:996,
1/LA/1159:1160		Single bulged C
homologous
IL_4WF9_035
IL_61258.15
IL_3JA1_0341/LA/998:1002,
1/LA/1153:1157		UAA/GAN
homologous
IL_5J7L_277
IL_38507.2
IL_3JA1_0351/LA/1004:1011,
1/LA/1150:1151		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_3JA1_0361/LA/1011:1013,
1/LA/1149:1150		Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_3JA1_0371/LA/1018:1024,
1/LA/1140:1144		Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_3JA1_0381/LA/1024:1030,
1/LA/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_3JA1_0391/LA/1031:1034,
1/LA/1121:1123		Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_3JA1_0401/LA/1038:1041,
1/LA/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_3JA1_0411/LA/1043:1051,
1/LA/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_3JA1_0421/LA/1059:1062,
1/LA/1076:1079		No text annotation
homologous
IL_6PRV_001
IL_92446.2
IL_3JA1_0431/LA/1087:1090,
1/LA/1101:1102		No text annotation
homologous
IL_6PRV_002
NA
IL_3JA1_2081/LA/1196:1198,
1/LA/1247:1250		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_3JA1_1831/LA/1202:1206,
1/LA/1240:1243		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_3JA1_0461/LA/1208:1215,
1/LA/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_3JA1_0471/LA/1262:1269,
1/LA/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_3JA1_0481/LA/1310:1313,
1/LA/1603:1604		Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_50694.7
IL_3JA1_0491/LA/1319:1323,
1/LA/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_3JA1_0501/LA/1351:1355,
1/LA/1376:1380		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_3JA1_0511/LA/1357:1361,
1/LA/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_3JA1_0521/LA/1415:1416,
1/LA/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_3JA1_0531/LA/1417:1421,
1/LA/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_3JA1_0541/LA/1432:1435,
1/LA/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_3JA1_0551/LA/1437:1440,
1/LA/1551:1555		tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_3JA1_0561/LA/1468:1471,
1/LA/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_3JA1_1841/LA/1474:1478,
1/LA/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_3JA1_0581/LA/1480:1482,
1/LA/1507:1511		No text annotation
IL_3JA1_0591/LA/1489:1491,
1/LA/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.7
IL_3JA1_0601/LA/1526:1529,
1/LA/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_3JA1_0611/LA/1651:1656,
1/LA/2004:2006		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_3JA1_0621/LA/1663:1665,
1/LA/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_3JA1_0631/LA/1666:1669,
1/LA/1993:1994		Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_50694.7
IL_3JA1_1851/LA/1666:1674,
1/LA/1990:1994		No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_3JA1_0641/LA/1669:1674,
1/LA/1990:1993		Intercalated tWH
homologous
IL_4WF9_065
IL_76758.2
IL_3JA1_0651/LA/1686:1691,
1/LA/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_3JA1_0661/LA/1712:1718,
1/LA/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_3JA1_1861/LA/1720:1724,
1/LA/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_3JA1_0681/LA/1727:1728,
1/LA/1731:1733		Single bulged C
geometric
IL_5J7L_311
IL_61258.15
IL_3JA1_0691/LA/1770:1771,
1/LA/1980:1982		Single bulged A
homologous
IL_7A0S_064
IL_31462.7
IL_3JA1_0701/LA/1798:1804,
1/LA/1813:1821		Kink-turn related
homologous
IL_7RQB_070
NA
IL_3JA1_0711/LA/1837:1840,
1/LA/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_3JA1_0721/LA/1841:1842,
1/LA/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.5
IL_3JA1_2091/LA/1846:1849,
1/LA/1893:1894		No text annotation
IL_3JA1_1871/LA/1849:1860,
1/LA/1882:1893		No text annotation
IL_3JA1_0751/LA/1864:1867,
1/LA/1874:1878		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_3JA1_0761/LA/1933:1934,
1/LA/1964:1967		Major groove intercalation
geometric
IL_1U9S_003
IL_82107.5
IL_3JA1_1881/LA/1934:1946,
1/LA/1960:1964		No text annotation
IL_3JA1_0781/LA/2050:2052,
1/LA/2617:2618		Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_3JA1_0791/LA/2054:2056,
1/LA/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_3JA1_0801/LA/2067:2069,
1/LA/2442:2443		Single bulged U
homologous
IL_9DFE_080
IL_89505.4
IL_3JA1_0811/LA/2069:2071,
1/LA/2438:2442		No text annotation
IL_3JA1_0821/LA/2081:2083,
1/LA/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_3JA1_0831/LA/2085:2087,
1/LA/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_3JA1_2101/LA/2103:2105,
1/LA/2184:2186		Isolated non-canonical cWW pair
geometric
IL_7Y2P_002
IL_87907.2
IL_3JA1_2121/LA/2108:2110,
1/LA/2179:2181		Isolated non-canonical cWW pair
homologous
IL_3U4M_001
IL_28037.2
IL_3JA1_0861/LA/2110:2120,
1/LA/2177:2179		Major groove platform
geometric
IL_5J7L_264
IL_48076.6
IL_3JA1_1891/LA/2120:2122,
1/LA/2176:2177		Single stack bend
geometric
IL_4V84_420
IL_10569.1
IL_3JA1_1901/LA/2124:2138,
1/LA/2153:2174		No text annotation
IL_3JA1_0881/LA/2202:2204,
1/LA/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_3JA1_0891/LA/2297:2299,
1/LA/2317:2321		No text annotation
homologous
IL_5J7L_332
IL_61476.2
IL_3JA1_0901/LA/2350:2353,
1/LA/2364:2367		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_3JA1_0911/LA/2401:2403,
1/LA/2414:2415		Single bulged U
homologous
IL_4WF9_088
IL_89505.4
IL_3JA1_0921/LA/2456:2459,
1/LA/2493:2495		Isolated non-canonical cWW pair
geometric
IL_1U6B_001
IL_57744.1
IL_3JA1_1921/LA/2456:2461,
1/LA/2489:2495		No text annotation
IL_3JA1_0931/LA/2459:2461,
1/LA/2489:2493		No text annotation
IL_3JA1_0941/LA/2466:2470,
1/LA/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_3JA1_0951/LA/2507:2508,
1/LA/2580:2582		Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_3JA1_0961/LA/2510:2513,
1/LA/2571:2578		No text annotation
IL_3JA1_0971/LA/2521:2523,
1/LA/2540:2544		No text annotation
geometric
IL_6M0X_001
IL_36516.3
IL_3JA1_0991/LA/2591:2592,
1/LA/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_3JA1_1001/LA/2636:2640,
1/LA/2774:2782		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_3JA1_1011/LA/2652:2658,
1/LA/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7RQB_103
NA
IL_3JA1_1021/LA/2680:2684,
1/LA/2725:2727		C-loop
homologous
IL_4WF9_101
IL_63596.11
IL_3JA1_1031/LA/2687:2691,
1/LA/2718:2722		No text annotation
homologous
IL_5J7L_348
IL_23774.1
IL_3JA1_1941/LA/2695:2696,
1/LA/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_3JA1_1051/LA/2737:2742,
1/LA/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_3JA1_1061/LA/2806:2811,
1/LA/2889:2892		No text annotation
homologous
IL_5J7L_351
IL_29471.1
IL_3JA1_1071/LA/2838:2839,
1/LA/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_3JA1_1081/LA/2843:2846,
1/LA/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_3JA1_1091/LA/2847:2852,
1/LA/2865:2869		tHS double platform
homologous
IL_4WF9_108
IL_70411.2
IL_3JA1_1101/LB/17:18,
1/LB/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_3JA1_1111/LB/23:28,
1/LB/56:60		No text annotation
homologous
IL_5J7L_356
IL_18472.4
IL_3JA1_1121/LB/30:31,
1/LB/51:54		No text annotation
geometric
IL_8VTW_072
NA
IL_3JA1_1131/LB/34:38,
1/LB/44:48		Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_3JA1_1141/LB/71:79,
1/LB/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_3JA1_2141/SA/30:32,
1/SA/552:553		Single bulged G
homologous
IL_6CZR_113
NA
IL_3JA1_1161/SA/44:45,
1/SA/396:398		Single bulged A
homologous
IL_4LFB_002
IL_31462.7
IL_3JA1_1171/SA/47:52,
1/SA/359:361		No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_3JA1_1181/SA/54:56,
1/SA/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_3JA1_1191/SA/63:66,
1/SA/103:104		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_3JA1_1201/SA/67:69,
1/SA/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_3JA1_1211/SA/70:73,
1/SA/97:98		Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_3JA1_1961/SA/75:76,
1/SA/93:95		Single bulged G
homologous
IL_5J7L_395
IL_00225.14
IL_3JA1_1231/SA/128:131,
1/SA/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_3JA1_2151/SA/132:136,
1/SA/227:230		Minor groove platform related
homologous
IL_5J7L_010
IL_64231.5
IL_3JA1_1251/SA/144:146,
1/SA/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_3JA1_1261/SA/147:153,
1/SA/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_3JA1_1271/SA/203:206,
1/SA/213:214		Minor groove platform
geometric
IL_7RQB_073
NA
IL_3JA1_1281/SA/242:247,
1/SA/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_3JA1_1291/SA/249:252,
1/SA/274:275		No text annotation
homologous
IL_5J7L_015
IL_47074.2
IL_3JA1_1301/SA/292:293,
1/SA/304:308		No text annotation
IL_3JA1_1311/SA/367:369,
1/SA/392:393		Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_3JA1_2161/SA/371:375,
1/SA/389:390		C-loop
homologous
IL_4LFB_015
IL_03109.3
IL_3JA1_2171/SA/375:377,
1/SA/386:389		Isolated cWS basepair
geometric
IL_4WF9_044
IL_42997.3
IL_3JA1_1331/SA/409:416,
1/SA/427:433		No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_3JA1_1341/SA/440:442,
1/SA/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_3JA1_2181/SA/446:450,
1/SA/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
IL_88269.4
IL_3JA1_1361/SA/450:455,
1/SA/477:483		No text annotation
homologous
IL_4LFB_019
IL_31561.1
IL_3JA1_2191/SA/457:459,
1/SA/472:475		No text annotation
IL_3JA1_1381/SA/460:462,
1/SA/470:471		Minor groove platform
geometric
IL_2QWY_009
IL_51454.3
IL_3JA1_1391/SA/504:511,
1/SA/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_3JA1_1401/SA/515:521,
1/SA/528:536		Kink-turn related
homologous
IL_4LFB_021
IL_54177.4
IL_3JA1_1411/SA/569:575,
1/SA/880:881		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_3JA1_2201/SA/580:584,
1/SA/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_3JA1_1431/SA/594:596,
1/SA/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_3JA1_2211/SA/597:598,
1/SA/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_3JA1_1451/SA/605:612,
1/SA/628:633		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_3JA1_1461/SA/654:655,
1/SA/751:754		Major groove platform; stack outside cWW
geometric
IL_1KUQ_001
IL_50694.7
IL_3JA1_1471/SA/659:660,
1/SA/745:747		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_3JA1_1481/SA/662:666,
1/SA/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_3JA1_1491/SA/673:678,
1/SA/712:717		No text annotation
geometric
IL_5J7L_034
NA
IL_3JA1_1501/SA/684:688,
1/SA/699:706		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_3JA1_1511/SA/774:778,
1/SA/804:805		Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_3JA1_1521/SA/779:783,
1/SA/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_3JA1_1531/SA/887:894,
1/SA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_3JA1_2221/SA/922:923,
1/SA/1393:1395		Single bulged A
geometric
IL_9DFE_032
IL_31462.7
IL_3JA1_1551/SA/925:927,
1/SA/1390:1391		Single bulged G
homologous
IL_5J7L_040
IL_00225.14
IL_3JA1_1561/SA/933:935,
1/SA/1380:1384		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_3JA1_1571/SA/953:954,
1/SA/1226:1228		Minor groove platform
homologous
IL_4LFB_038
IL_51454.3
IL_3JA1_1581/SA/993:997,
1/SA/1044:1045		Minor groove platform
homologous
IL_5J7L_043
IL_47078.3
IL_3JA1_1591/SA/998:999,
1/SA/1041:1043		Single stack bend
homologous
IL_5J7L_044
IL_26793.1
IL_3JA1_1601/SA/1048:1051,
1/SA/1207:1209		No text annotation
geometric
IL_1NBS_006
NA
IL_3JA1_1611/SA/1051:1056,
1/SA/1204:1207		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_3JA1_1621/SA/1057:1058,
1/SA/1199:1203		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_3JA1_1631/SA/1060:1061,
1/SA/1195:1197		Single bulged U
homologous
IL_4LFB_046
IL_89505.4
IL_3JA1_1641/SA/1061:1063,
1/SA/1193:1195		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_3JA1_1651/SA/1124:1128,
1/SA/1144:1149		No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_3JA1_1661/SA/1129:1132,
1/SA/1142:1143		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_3JA1_2231/SA/1158:1161,
1/SA/1175:1181		No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_3JA1_1681/SA/1247:1253,
1/SA/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_3JA1_1691/SA/1255:1258,
1/SA/1277:1282		180 degree turn
homologous
IL_4LFB_052
IL_11344.2
IL_3JA1_1701/SA/1259:1263,
1/SA/1272:1276		Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_3JA1_1711/SA/1303:1308,
1/SA/1329:1334		No text annotation
geometric
IL_4V88_462
NA
IL_3JA1_1721/SA/1399:1401,
1/SA/1501:1504		No text annotation
homologous
IL_5J7L_058
IL_61438.4
IL_3JA1_1731/SA/1401:1404,
1/SA/1497:1501		No text annotation
homologous
IL_5J7L_059
IL_65718.4
IL_3JA1_1741/SA/1405:1407,
1/SA/1494:1496		Isolated non-canonical cWW pair
geometric
IL_4Y1M_005
IL_07785.1
IL_3JA1_1751/SA/1407:1409,
1/SA/1491:1494		Stack and bulge
geometric
IL_2O3X_001
IL_31737.3
IL_3JA1_2021/SA/1412:1414,
1/SA/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_3JA1_2031/SA/1416:1419,
1/SA/1481:1484		Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_3JA1_1781/SA/1430:1435,
1/SA/1466:1470		Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_3JA1_2241/SA/1439:1443,
1/SA/1459:1462		No text annotation
IL_3JA1_1801/SA/1445:1448,
1/SA/1455:1457		No text annotation
homologous
IL_5J7L_065
IL_31531.3

Problematic loops

#loop idProblemSequence
IL_3JA1_181No text annotation
IL_3JA1_024No text annotation
IL_3JA1_027No text annotation
IL_3JA1_044Tandem non-canonical cWW pairs
IL_3JA1_045No text annotation
IL_3JA1_057No text annotation
IL_3JA1_067Triple sheared with non-canonical cWW
IL_3JA1_073No text annotation
IL_3JA1_074No text annotation
IL_3JA1_077No text annotation
IL_3JA1_084Other IL
IL_3JA1_211Isolated non-canonical cWW pair
IL_3JA1_085No text annotation
IL_3JA1_087No text annotation
IL_3JA1_191Tandem non-canonical cWW pairs
IL_3JA1_213Isolated non-canonical cWW pair
IL_3JA1_193No text annotation
IL_3JA1_098Isolated non-canonical cWW pair
IL_3JA1_104Isolated cWS basepair
IL_3JA1_195Isolated non-canonical cWW contact
IL_3JA1_115Tandem non-canonical cWW pairs
IL_3JA1_122Single bulged G, near cWW
IL_3JA1_197No text annotation
IL_3JA1_124No text annotation
IL_3JA1_198No text annotation
IL_3JA1_132No text annotation
IL_3JA1_135No text annotation
IL_3JA1_199No text annotation
IL_3JA1_137No text annotation
IL_3JA1_142tSH-tHW-tHS-cWW
IL_3JA1_1448-nt loop receptor
IL_3JA1_200Isolated non-canonical cWW pair
IL_3JA1_154Isolated non-canonical cWW with bulges
IL_3JA1_201No text annotation
IL_3JA1_167No text annotation
IL_3JA1_176Tandem non-canonical cWW pairs
IL_3JA1_177No text annotation
IL_3JA1_179No text annotation
IL_3JA1_204No text annotation
IL_3JA1_205No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3JA1_0011/LA/30:31,
1/LA/474:481,
1/LA/509:510		No text annotation
homologous
J3_7RQB_001
NA
J3_3JA1_0271/LA/30:31,
1/LA/474:484,
1/LA/496:510		No text annotation
homologous
J3_5J7L_066
J3_92134.2
J3_3JA1_0281/LA/32:35,
1/LA/445:461,
1/LA/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_3JA1_0391/LA/55:57,
1/LA/70:76,
1/LA/110:115		No text annotation
J3_3JA1_0291/LA/297:301,
1/LA/316:325,
1/LA/337:341		No text annotation
homologous
J3_9DFE_006
J3_46299.2
J3_3JA1_0031/LA/683:689,
1/LA/773:775,
1/LA/791:794		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_3JA1_0041/LA/698:700,
1/LA/732:736,
1/LA/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_3JA1_0051/LA/1055:1057,
1/LA/1081:1087,
1/LA/1102:1104		No text annotation
homologous
J3_5J7L_040
J3_28621.5
J3_3JA1_0061/LA/1298:1303,
1/LA/1625:1627,
1/LA/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_3JA1_0071/LA/1306:1309,
1/LA/1605:1611,
1/LA/1620:1622		No text annotation
homologous
J3_5J7L_042
J3_19545.2
J3_3JA1_0301/LA/1344:1350,
1/LA/1381:1385,
1/LA/1402:1403		No text annotation
homologous
J3_9DFE_012
J3_31965.2
J3_3JA1_0401/LA/1424:1429,
1/LA/1564:1565,
1/LA/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_3JA1_0081/LA/2091:2093,
1/LA/2196:2200,
1/LA/2223:2228		Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_3JA1_0411/LA/2282:2284,
1/LA/2384:2395,
1/LA/2421:2427		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_3JA1_0101/LA/2295:2297,
1/LA/2321:2323,
1/LA/2332:2337		No text annotation
homologous
J3_5J7L_045
J3_61124.2
J3_3JA1_0321/LA/2295:2299,
1/LA/2317:2323,
1/LA/2332:2337		No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_3JA1_0111/LA/2517:2520,
1/LA/2545:2547,
1/LA/2561:2567		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_3JA1_0121/LA/2789:2791,
1/LA/2805:2806,
1/LA/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_3JA1_0131/LA/2812:2815,
1/LA/2831:2836,
1/LA/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_3JA1_0141/LB/10:16,
1/LB/68:70,
1/LB/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_3JA1_0151/SA/46:47,
1/SA/361:367,
1/SA/393:395		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_3JA1_0331/SA/46:52,
1/SA/359:367,
1/SA/393:395		No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_3JA1_0161/SA/586:588,
1/SA/651:654,
1/SA/754:755		No text annotation
geometric
J3_5J7L_002
J3_56052.5
J3_3JA1_0341/SA/586:588,
1/SA/651:655,
1/SA/751:755		No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_3JA1_0171/SA/672:673,
1/SA/717:725,
1/SA/732:734		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_3JA1_0181/SA/826:829,
1/SA/857:861,
1/SA/868:874		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_3JA1_0351/SA/936:939,
1/SA/1344:1350,
1/SA/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_3JA1_0191/SA/943:946,
1/SA/1235:1237,
1/SA/1337:1340		No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_3JA1_0201/SA/955:962,
1/SA/973:984,
1/SA/1221:1225		No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_3JA1_0211/SA/990:993,
1/SA/1045:1047,
1/SA/1210:1215		No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_3JA1_0221/SA/1003:1006,
1/SA/1023:1027,
1/SA/1034:1037		No text annotation
J3_3JA1_0231/SA/1063:1068,
1/SA/1107:1113,
1/SA/1187:1193		No text annotation
homologous
J3_5J7L_008
J3_08394.3
J3_3JA1_0371/SA/1073:1074,
1/SA/1083:1086,
1/SA/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_79369.1
J3_3JA1_0251/SA/1116:1119,
1/SA/1154:1158,
1/SA/1181:1184		No text annotation
J3_3JA1_0421/SA/1116:1119,
1/SA/1154:1161,
1/SA/1175:1184		No text annotation
J3_3JA1_0261/SA/1237:1241,
1/SA/1296:1303,
1/SA/1334:1337		No text annotation
homologous
J3_4LFB_009
J3_37047.6
J4_3JA1_0011/LA/268:269,
1/LA/370:375,
1/LA/399:406,
1/LA/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_3JA1_0021/LA/297:301,
1/LA/316:319,
1/LA/323:325,
1/LA/337:341		No text annotation
homologous
J4_5J7L_019
J4_71729.5
J4_3JA1_0031/LA/601:604,
1/LA/624:628,
1/LA/635:638,
1/LA/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_3JA1_0041/LA/1270:1276,
1/LA/1294:1295,
1/LA/1645:1648,
1/LA/2009:2010		No text annotation
homologous
J4_7A0S_004
J4_64571.5
J4_3JA1_0051/LA/1310:1314,
1/LA/1338:1343,
1/LA/1404:1405,
1/LA/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_3JA1_0061/LA/1313:1314,
1/LA/1338:1343,
1/LA/1404:1405,
1/LA/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_3JA1_0071/LA/1444:1445,
1/LA/1466:1467,
1/LA/1525:1526,
1/LA/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_3JA1_0081/LA/1772:1776,
1/LA/1788:1792,
1/LA/1827:1830,
1/LA/1975:1979		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_3JA1_0091/LA/1833:1835,
1/LA/1905:1906,
1/LA/1924:1933,
1/LA/1967:1972		No text annotation
homologous
J4_5J7L_026
J4_93343.1
J4_3JA1_0101/LA/2285:2289,
1/LA/2343:2347,
1/LA/2370:2373,
1/LA/2380:2383		No text annotation
J4_3JA1_0111/LA/2643:2646,
1/LA/2674:2676,
1/LA/2731:2735,
1/LA/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J4_3JA1_0121/S2/7:10,
1/S2/26:28,
1/S2/44:50,
1/S2/66:67		tRNA junction
homologous
J4_4V9Q_031
J4_70449.29
J4_3JA1_0161/SA/115:123,
1/SA/238:240,
1/SA/286:289,
1/SA/311:312		No text annotation
J4_3JA1_0141/SA/142:144,
1/SA/178:184,
1/SA/193:198,
1/SA/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_3JA1_0151/SA/575:577,
1/SA/764:769,
1/SA/810:821,
1/SA/879:880		No text annotation
homologous
J4_6CZR_013
NA
J5_3JA1_0011/LA/47:54,
1/LA/116:121,
1/LA/130:131,
1/LA/148:150,
1/LA/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_3JA1_0101/LA/531:533,
1/LA/560:564,
1/LA/577:579,
1/LA/1261:1262,
1/LA/2017:2018		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_3JA1_0031/LA/584:589,
1/LA/668:671,
1/LA/809:812,
1/LA/1195:1196,
1/LA/1250:1256		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_3JA1_0041/LA/1674:1682,
1/LA/1706:1707,
1/LA/1751:1752,
1/LA/1756:1764,
1/LA/1988:1990		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_3JA1_0051/LA/2057:2064,
1/LA/2446:2455,
1/LA/2496:2507,
1/LA/2582:2588,
1/LA/2606:2611		No text annotation
J5_3JA1_0061/LA/2074:2077,
1/LA/2243:2246,
1/LA/2258:2259,
1/LA/2281:2282,
1/LA/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J5_3JA1_0071/SA/36:39,
1/SA/403:406,
1/SA/436:440,
1/SA/497:500,
1/SA/545:548		No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_3JA1_0081/SA/36:39,
1/SA/403:406,
1/SA/436:442,
1/SA/492:500,
1/SA/545:548		No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_3JA1_0111/SA/58:61,
1/SA/106:113,
1/SA/314:316,
1/SA/337:339,
1/SA/350:354		No text annotation
homologous
J5_5J7L_003
J5_59910.6
J6_3JA1_0011/LA/45:46,
1/LA/179:183,
1/LA/214:224,
1/LA/231:235,
1/LA/262:266,
1/LA/426:433		No text annotation
J7_3JA1_0011/LA/8:15,
1/LA/525:531,
1/LA/2018:2023,
1/LA/2040:2043,
1/LA/2625:2630,
1/LA/2788:2789,
1/LA/2894:2895		No text annotation
J7_3JA1_0021/LA/817:822,
1/LA/835:838,
1/LA/940:946,
1/LA/971:976,
1/LA/987:991,
1/LA/1163:1164,
1/LA/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_3JA1_002No text annotation
J3_3JA1_031No text annotation
J3_3JA1_009No text annotation
J3_3JA1_036No text annotation
J3_3JA1_024No text annotation
J3_3JA1_038No text annotation
J4_3JA1_013No text annotation
J5_3JA1_002No text annotation
J5_3JA1_009No text annotation

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