Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3JA1_0281/LA/1064:1074No text annotation
geometric
HL_2Y9H_003
HL_75660.6
HL_3JA1_1101/SA/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_3JA1_0851/SA/419:424UNCG
homologous
HL_5J7L_011
NA

Problematic loops

#loop idProblemSequence
HL_3JA1_001Pseudoknot with intercalation
HL_3JA1_107tRNA anticodon loop
HL_3JA1_002No text annotation
HL_3JA1_003No text annotation
HL_3JA1_004UNCG
HL_3JA1_005No text annotation
HL_3JA1_006No text annotation
HL_3JA1_007No text annotation
HL_3JA1_008No text annotation
HL_3JA1_009T-loop with 2 stacked bulged bases
HL_3JA1_010No text annotation
HL_3JA1_011T-loop with unstacked turn
HL_3JA1_012No text annotation
HL_3JA1_111No text annotation
HL_3JA1_013Pseudoknot geometry
HL_3JA1_014GNRA
HL_3JA1_015GNRA
HL_3JA1_016No text annotation
HL_3JA1_017No text annotation
HL_3JA1_018No text annotation
HL_3JA1_019GNRA
HL_3JA1_020No text annotation
HL_3JA1_112No text annotation
HL_3JA1_021No text annotation
HL_3JA1_022No text annotation
HL_3JA1_023UNCG variation
HL_3JA1_024No text annotation
HL_3JA1_025No text annotation
HL_3JA1_026tRNA anticodon loop
HL_3JA1_027No text annotation
HL_3JA1_029No text annotation
HL_3JA1_030Mini UNCG
HL_3JA1_031GNRA
HL_3JA1_032T-loop with 2 stacked bulged bases
HL_3JA1_033Pseudoknot geometry with 3' bulge
HL_3JA1_034GNRA
HL_3JA1_035No text annotation
HL_3JA1_036Mini UNCG
HL_3JA1_037No text annotation
HL_3JA1_038UNCG
HL_3JA1_039Mini UNCG
HL_3JA1_040No text annotation
HL_3JA1_041GNRA
HL_3JA1_042No text annotation
HL_3JA1_043No text annotation
HL_3JA1_044No text annotation
HL_3JA1_045No text annotation
HL_3JA1_046GNRA related
HL_3JA1_047GNRA
HL_3JA1_048No text annotation
HL_3JA1_049No text annotation
HL_3JA1_050No text annotation
HL_3JA1_051No text annotation
HL_3JA1_052No text annotation
HL_3JA1_053No text annotation
HL_3JA1_108No text annotation
HL_3JA1_113No text annotation
HL_3JA1_054No text annotation
HL_3JA1_055No text annotation
HL_3JA1_056Pseudoknot geometry
HL_3JA1_109No text annotation
HL_3JA1_057GNRA
HL_3JA1_058GNRA
HL_3JA1_059No text annotation
HL_3JA1_060No text annotation
HL_3JA1_114No text annotation
HL_3JA1_061GNRA variation
HL_3JA1_062No text annotation
HL_3JA1_063GNRA
HL_3JA1_064GNRA
HL_3JA1_065No text annotation
HL_3JA1_115Ribsomal LSU H95
HL_3JA1_066No text annotation
HL_3JA1_067Mini UNCG
HL_3JA1_068No text annotation
HL_3JA1_069GNRA
HL_3JA1_070No text annotation
HL_3JA1_071No text annotation
HL_3JA1_116Mini UNCG
HL_3JA1_072No text annotation
HL_3JA1_073tRNA anticodon loop
HL_3JA1_074T-loop with 2 stacked bulged bases
HL_3JA1_075No text annotation
HL_3JA1_076No text annotation
HL_3JA1_117No text annotation
HL_3JA1_077GNRA
HL_3JA1_078GNRA
HL_3JA1_079No text annotation
HL_3JA1_080GNRA related
HL_3JA1_081GNRA
HL_3JA1_082No text annotation
HL_3JA1_083UNCG
HL_3JA1_084GNRA
HL_3JA1_086No text annotation
HL_3JA1_087No text annotation
HL_3JA1_088GNRA-like with tWH
HL_3JA1_089No text annotation
HL_3JA1_090GNRA
HL_3JA1_091T-loop
HL_3JA1_092No text annotation
HL_3JA1_093GNRA
HL_3JA1_094GNRA
HL_3JA1_095No text annotation
HL_3JA1_096GNRA
HL_3JA1_097No text annotation
HL_3JA1_098GNRA
HL_3JA1_099T-loop related
HL_3JA1_100No text annotation
HL_3JA1_101GNRA
HL_3JA1_102GNRA
HL_3JA1_103T-loop with 3 stacked bulged bases
HL_3JA1_104No text annotation
HL_3JA1_105No text annotation
HL_3JA1_106GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3JA1_0861/LA/2110:2120,
1/LA/2177:2179
Major groove platform
geometric
IL_5J7L_264
NA
IL_3JA1_0941/LA/2466:2470,
1/LA/2480:2484
Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_3JA1_1021/LA/2680:2684,
1/LA/2725:2727
C-loop
homologous
IL_4WF9_101
IL_63596.12
IL_3JA1_1051/LA/2737:2742,
1/LA/2762:2767
UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_3JA1_2181/SA/446:450,
1/SA/483:488
tSH-tHW-tWW
homologous
IL_5J7L_022
NA
IL_3JA1_1651/SA/1124:1128,
1/SA/1144:1149
No text annotation
homologous
IL_5J7L_051
NA

Problematic loops

#loop idProblemSequence
IL_3JA1_181No text annotation
IL_3JA1_001Triple sheared with non-canonical cWW
IL_3JA1_002Single bulged A
IL_3JA1_003Minor groove platform
IL_3JA1_004Kink-turn
IL_3JA1_005Single stack bend
IL_3JA1_0068x7 Sarcin-Ricin; G-bulge
IL_3JA1_0077x6 Sarcin-Ricin; G-bulge
IL_3JA1_008No text annotation
IL_3JA1_009No text annotation
IL_3JA1_010No text annotation
IL_3JA1_011No text annotation
IL_3JA1_012Double sheared
IL_3JA1_013Isolated non-canonical cWW pair
IL_3JA1_014AAA cross-strand stack
IL_3JA1_015Isolated non-canonical cWW pair
IL_3JA1_016tHW-tHW cross-strand stack
IL_3JA1_017Single bulged A
IL_3JA1_018Single bulged G
IL_3JA1_019Triple sheared
IL_3JA1_020Major groove platform
IL_3JA1_021Multiple bulged bases
IL_3JA1_022Single stack bend
IL_3JA1_023No text annotation
IL_3JA1_024No text annotation
IL_3JA1_206Single stack bend
IL_3JA1_0257x7 Sarcin-Ricin with intercalated A; G-bulge
IL_3JA1_026Single bulged G
IL_3JA1_027No text annotation
IL_3JA1_207C-loop with bulged stacked A's
IL_3JA1_028Isolated non-canonical cWW pair
IL_3JA1_029Double sheared with non-canonical cWW
IL_3JA1_030No text annotation
IL_3JA1_182No text annotation
IL_3JA1_031No text annotation
IL_3JA1_032Minor groove platform
IL_3JA1_033Single bulged C
IL_3JA1_034UAA/GAN
IL_3JA1_035Multiple bulged bases
IL_3JA1_036Single bulged U
IL_3JA1_037Kink-turn related
IL_3JA1_038No text annotation
IL_3JA1_039Isolated non-canonical cWW pair
IL_3JA1_040Tandem non-canonical cWW pairs
IL_3JA1_041Kink-turn
IL_3JA1_042No text annotation
IL_3JA1_043No text annotation
IL_3JA1_208Isolated cWS basepair
IL_3JA1_044Tandem non-canonical cWW pairs
IL_3JA1_183No text annotation
IL_3JA1_045No text annotation
IL_3JA1_046Kink-turn
IL_3JA1_0478x7 Sarcin-Ricin; G-bulge
IL_3JA1_048Major groove platform; stack outside cWW
IL_3JA1_049C-loop
IL_3JA1_050UAA/GAN
IL_3JA1_051tSH-tHW-tHS
IL_3JA1_052No text annotation
IL_3JA1_053UAA/GAN
IL_3JA1_054Tandem non-canonical cWW pairs
IL_3JA1_055tSH-tHW
IL_3JA1_056No text annotation
IL_3JA1_184tSH-tHW-tHS
IL_3JA1_057No text annotation
IL_3JA1_058No text annotation
IL_3JA1_059Single bulged A
IL_3JA1_060UAA/GAN variation
IL_3JA1_061No text annotation
IL_3JA1_062Isolated tWW turn
IL_3JA1_063Major groove platform; stack outside cWW
IL_3JA1_185No text annotation
IL_3JA1_064Intercalated tWH
IL_3JA1_065tSH-tSH-tHH-tHS
IL_3JA1_0666x5 Sarcin-Ricin; G-bulge
IL_3JA1_186Triple sheared
IL_3JA1_067Triple sheared with non-canonical cWW
IL_3JA1_068Single bulged C
IL_3JA1_069Single bulged A
IL_3JA1_070Kink-turn related
IL_3JA1_071Minor groove platform, major groove intercalation
IL_3JA1_072Major groove intercalation
IL_3JA1_073No text annotation
IL_3JA1_209No text annotation
IL_3JA1_187No text annotation
IL_3JA1_074No text annotation
IL_3JA1_075UAA/GAN related
IL_3JA1_076Major groove intercalation
IL_3JA1_188No text annotation
IL_3JA1_077No text annotation
IL_3JA1_078Major groove platform
IL_3JA1_079No text annotation
IL_3JA1_080Single bulged U
IL_3JA1_081No text annotation
IL_3JA1_082Isolated tHS basepair with bulges
IL_3JA1_083Isolated non-canonical cWW pair
IL_3JA1_210Isolated non-canonical cWW pair
IL_3JA1_084Other IL
IL_3JA1_211Isolated non-canonical cWW pair
IL_3JA1_085No text annotation
IL_3JA1_212Isolated non-canonical cWW pair
IL_3JA1_189Single stack bend
IL_3JA1_087No text annotation
IL_3JA1_190No text annotation
IL_3JA1_191Tandem non-canonical cWW pairs
IL_3JA1_213Isolated non-canonical cWW pair
IL_3JA1_088Single bulged U
IL_3JA1_089No text annotation
IL_3JA1_090Double sheared
IL_3JA1_091Single bulged U
IL_3JA1_092Isolated non-canonical cWW pair
IL_3JA1_192No text annotation
IL_3JA1_093No text annotation
IL_3JA1_095Major groove platform
IL_3JA1_193No text annotation
IL_3JA1_096No text annotation
IL_3JA1_097No text annotation
IL_3JA1_098Isolated non-canonical cWW pair
IL_3JA1_099Single bulged A
IL_3JA1_100tSH-tHS-tHW
IL_3JA1_101Sarcin-Ricin target in LSU H95; G-bulge
IL_3JA1_103UAA/GAN related, with intercalation
IL_3JA1_104Isolated cWS basepair
IL_3JA1_194Multiple bulged bases
IL_3JA1_106No text annotation
IL_3JA1_107Major groove intercalation
IL_3JA1_108Multiple bulged bases with non-canonical cWW
IL_3JA1_109tHS double platform
IL_3JA1_110Major groove intercalation
IL_3JA1_111No text annotation
IL_3JA1_112No text annotation
IL_3JA1_113Symmetric double minor groove platform
IL_3JA1_114Bacterial 5S Loop E
IL_3JA1_214Single bulged G
IL_3JA1_195Isolated non-canonical cWW contact
IL_3JA1_115Tandem non-canonical cWW pairs
IL_3JA1_116Single bulged A
IL_3JA1_117No text annotation
IL_3JA1_118Minor groove platform
IL_3JA1_119Multiple bulged bases
IL_3JA1_120Minor groove platform with extra cWW
IL_3JA1_121Minor groove platform
IL_3JA1_196Single bulged G
IL_3JA1_122Single bulged G, near cWW
IL_3JA1_123Isolated non-canonical cWW pair
IL_3JA1_215Minor groove platform related
IL_3JA1_197No text annotation
IL_3JA1_124No text annotation
IL_3JA1_125Isolated cWH basepair
IL_3JA1_126tWH-tWH-tHW-tHW
IL_3JA1_127Minor groove platform
IL_3JA1_198No text annotation
IL_3JA1_128Kink-turn with non-sequential stacking
IL_3JA1_129No text annotation
IL_3JA1_130No text annotation
IL_3JA1_131Single bulged U
IL_3JA1_216C-loop
IL_3JA1_132No text annotation
IL_3JA1_217Isolated cWS basepair
IL_3JA1_133No text annotation
IL_3JA1_134No text annotation
IL_3JA1_135No text annotation
IL_3JA1_136No text annotation
IL_3JA1_199No text annotation
IL_3JA1_137No text annotation
IL_3JA1_219No text annotation
IL_3JA1_138Minor groove platform
IL_3JA1_139SSU/LSU pseudoknot
IL_3JA1_140Kink-turn related
IL_3JA1_141No text annotation
IL_3JA1_142tSH-tHW-tHS-cWW
IL_3JA1_220tSH-tHW-tHS
IL_3JA1_143Major groove platform
IL_3JA1_221Major groove minor groove platform; mini C-loop
IL_3JA1_1448-nt loop receptor
IL_3JA1_145No text annotation
IL_3JA1_146Major groove platform; stack outside cWW
IL_3JA1_147Single stack bend
IL_3JA1_148Tandem non-canonical cWW pairs
IL_3JA1_149No text annotation
IL_3JA1_150Kink-turn
IL_3JA1_151Left turn
IL_3JA1_152tSH-tHW-tHS
IL_3JA1_200Isolated non-canonical cWW pair
IL_3JA1_1538x6 Sarcin-Ricin with inserted Y; G-bulge
IL_3JA1_222Single bulged A
IL_3JA1_154Isolated non-canonical cWW with bulges
IL_3JA1_155Single bulged G
IL_3JA1_156Minor groove platform
IL_3JA1_157Minor groove platform
IL_3JA1_158Minor groove platform
IL_3JA1_201No text annotation
IL_3JA1_159Single stack bend
IL_3JA1_160No text annotation
IL_3JA1_161Tandem non-canonical cWW pairs
IL_3JA1_162Minor groove platform
IL_3JA1_163Single bulged U
IL_3JA1_164Isolated non-canonical cWW pair
IL_3JA1_166Minor groove platform
IL_3JA1_223No text annotation
IL_3JA1_167No text annotation
IL_3JA1_168No text annotation
IL_3JA1_169180 degree turn
IL_3JA1_170Double sheared with non-canonical cWW
IL_3JA1_171No text annotation
IL_3JA1_172No text annotation
IL_3JA1_173No text annotation
IL_3JA1_174Isolated non-canonical cWW pair
IL_3JA1_175Stack and bulge
IL_3JA1_202Isolated non-canonical cWW pair
IL_3JA1_176Tandem non-canonical cWW pairs
IL_3JA1_203Double sheared
IL_3JA1_177No text annotation
IL_3JA1_178Triple sheared related
IL_3JA1_179No text annotation
IL_3JA1_204No text annotation
IL_3JA1_224No text annotation
IL_3JA1_205No text annotation
IL_3JA1_180No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3JA1_0411/LA/2282:2284,
1/LA/2384:2395,
1/LA/2421:2427
No text annotation
homologous
J3_5J7L_070
NA
J3_3JA1_0141/LB/10:16,
1/LB/68:70,
1/LB/106:110
No text annotation
homologous
J3_5J7L_049
NA

Problematic loops

#loop idProblemSequence
J3_3JA1_001No text annotation
J3_3JA1_027No text annotation
J3_3JA1_028No text annotation
J3_3JA1_039No text annotation
J3_3JA1_002No text annotation
J3_3JA1_029No text annotation
J3_3JA1_003No text annotation
J3_3JA1_004No text annotation
J3_3JA1_005No text annotation
J3_3JA1_006No text annotation
J3_3JA1_007No text annotation
J3_3JA1_030No text annotation
J3_3JA1_040No text annotation
J3_3JA1_031No text annotation
J3_3JA1_008Kink-turn 3-way junction
J3_3JA1_009No text annotation
J3_3JA1_010No text annotation
J3_3JA1_032No text annotation
J3_3JA1_011No text annotation
J3_3JA1_012No text annotation
J3_3JA1_013No text annotation
J3_3JA1_015No text annotation
J3_3JA1_033No text annotation
J3_3JA1_016No text annotation
J3_3JA1_034No text annotation
J3_3JA1_017No text annotation
J3_3JA1_018No text annotation
J3_3JA1_035No text annotation
J3_3JA1_019No text annotation
J3_3JA1_020No text annotation
J3_3JA1_021No text annotation
J3_3JA1_022No text annotation
J3_3JA1_036No text annotation
J3_3JA1_023No text annotation
J3_3JA1_037No text annotation
J3_3JA1_024No text annotation
J3_3JA1_025No text annotation
J3_3JA1_042No text annotation
J3_3JA1_038No text annotation
J3_3JA1_026No text annotation
J4_3JA1_001No text annotation
J4_3JA1_002No text annotation
J4_3JA1_003No text annotation
J4_3JA1_004No text annotation
J4_3JA1_005No text annotation
J4_3JA1_006No text annotation
J4_3JA1_007No text annotation
J4_3JA1_008No text annotation
J4_3JA1_009No text annotation
J4_3JA1_010No text annotation
J4_3JA1_011No text annotation
J4_3JA1_012tRNA junction
J4_3JA1_016No text annotation
J4_3JA1_013No text annotation
J4_3JA1_014No text annotation
J4_3JA1_015No text annotation
J5_3JA1_001No text annotation
J5_3JA1_010No text annotation
J5_3JA1_002No text annotation
J5_3JA1_003No text annotation
J5_3JA1_004No text annotation
J5_3JA1_005No text annotation
J5_3JA1_006No text annotation
J5_3JA1_007No text annotation
J5_3JA1_008No text annotation
J5_3JA1_011No text annotation
J5_3JA1_009No text annotation
J6_3JA1_001No text annotation
J7_3JA1_001No text annotation
J7_3JA1_002No text annotation

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