HL_3JA1_027

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_027 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.393

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JA1|1|LA|G|978
3JA1|1|LA|A|979
3JA1|1|LA|A|980
3JA1|1|LA|A|981
3JA1|1|LA|C|982
3JA1|1|LA|A|983
3JA1|1|LA|A|984
3JA1|1|LA|C|985

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LS

50S ribosomal protein L20