HL_3JA1_036

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

3JA1|1|LA|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_036 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.2536

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

3JA1|1|LA|G|1450
3JA1|1|LA|C|1451
3JA1|1|LA|G|1452
3JA1|1|LA|A|1453
3JA1|1|LA|C|1454
3JA1|1|LA|G|1455
3JA1|1|LA|G|1456
3JA1|1|LA|U|1457
3JA1|1|LA|U|1458
3JA1|1|LA|G|1459
3JA1|1|LA|U|1460
3JA1|1|LA|C|1461

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LP

50S ribosomal protein L17