HL_3JA1_040

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACACCG

Length

8 nucleotides

Bulged bases

3JA1|1|LA|A|1614, 3JA1|1|LA|A|1616, 3JA1|1|LA|C|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_040 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.2005

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

3JA1|1|LA|C|1612
3JA1|1|LA|G|1613
3JA1|1|LA|A|1614
3JA1|1|LA|C|1615
3JA1|1|LA|A|1616
3JA1|1|LA|C|1617
3JA1|1|LA|C|1618
3JA1|1|LA|G|1619

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34

Chain LU

50S ribosomal protein L22