HL_3JA1_054

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

3JA1|1|LA|A|2268, 3JA1|1|LA|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_054 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.3778

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

3JA1|1|LA|C|2264
3JA1|1|LA|U|2265
3JA1|1|LA|A|2266
3JA1|1|LA|A|2267
3JA1|1|LA|A|2268
3JA1|1|LA|G|2269
3JA1|1|LA|A|2270
3JA1|1|LA|G|2271
3JA1|1|LA|U|2272
3JA1|1|LA|A|2273
3JA1|1|LA|A|2274
3JA1|1|LA|C|2275
3JA1|1|LA|G|2276

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LO

50S ribosomal protein L16

Chain LY

50S ribosomal protein L27