HL_3JA1_055

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_055 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.248

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JA1|1|LA|G|2303
3JA1|1|LA|G|2304
3JA1|1|LA|U|2305
3JA1|1|LA|C|2306
3JA1|1|LA|G|2307
3JA1|1|LA|G|2308
3JA1|1|LA|A|2309
3JA1|1|LA|C|2310
3JA1|1|LA|A|2311
3JA1|1|LA|U|2312
3JA1|1|LA|C|2313

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LG

50S ribosomal protein L5