HL_3JA1_068

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

3JA1|1|LA|A|2820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_068 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.154

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3JA1|1|LA|G|2819
3JA1|1|LA|A|2820
3JA1|1|LA|A|2821
3JA1|1|LA|G|2822
3JA1|1|LA|A|2823
3JA1|1|LA|C|2824
3JA1|1|LA|G|2825
3JA1|1|LA|A|2826
3JA1|1|LA|C|2827

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LE

50S ribosomal protein L3

Chain LP

50S ribosomal protein L17