HL_3JA1_101

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

3JA1|1|SA|A|1167, 3JA1|1|SA|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_101 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.4336

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3JA1|1|SA|U|1165
3JA1|1|SA|G|1166
3JA1|1|SA|A|1167
3JA1|1|SA|U|1168
3JA1|1|SA|A|1169
3JA1|1|SA|A|1170
3JA1|1|SA|A|1171

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SB

30S ribosomal protein S2

Chain SU

30S ribosomal protein S21