HL_3JA1_107

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAUAUGAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_107 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.332

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3JA1|1|LA|G|86
3JA1|1|LA|U|87
3JA1|1|LA|G|88
3JA1|1|LA|A|89
3JA1|1|LA|U|90
3JA1|1|LA|A|91
3JA1|1|LA|U|92
3JA1|1|LA|G|93
3JA1|1|LA|A|94
3JA1|1|LA|A|95
3JA1|1|LA|C|96

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L0

50S ribosomal protein L29

Chain LV

50S ribosomal protein L23

Chain LW

50S ribosomal protein L24