HL_3JA1_109

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUGACGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_109 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3888

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JA1|1|LA|C|2354
3JA1|1|LA|G|2355
3JA1|1|LA|U|2356
3JA1|1|LA|G|2357
3JA1|1|LA|A|2358
3JA1|1|LA|C|2359
3JA1|1|LA|G|2360
3JA1|1|LA|G|2361
3JA1|1|LA|C|2362
3JA1|1|LA|G|2363

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L35

Chain LN

50S ribosomal protein L15

Chain LY

50S ribosomal protein L27