HL_3JAG_024

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

3JAG|1|5|C|1439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_024 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2823

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3JAG|1|5|C|1436
3JAG|1|5|C|1437
3JAG|1|5|U|1438
3JAG|1|5|C|1439
3JAG|1|5|U|1440
3JAG|1|5|C|1441
3JAG|1|5|C|1442
3JAG|1|5|A|1443
3JAG|1|5|G|1444
3JAG|1|5|U|1445
3JAG|1|5|C|1446
3JAG|1|5|C|1447
3JAG|1|5|G|1448

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain F

uL30

Chain Q

eL18