HL_3JAG_070

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AAGCAGAAU

Length

9 nucleotides

Bulged bases

3JAG|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_070 not in the Motif Atlas

Geometric match to HL_4V88_197

Geometric discrepancy: 0.3488

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3JAG|1|5|A|4473
3JAG|1|5|A|4474
3JAG|1|5|G|4475
3JAG|1|5|C|4476
3JAG|1|5|A|4477
3JAG|1|5|G|4478
3JAG|1|5|A|4479
3JAG|1|5|A|4480
3JAG|1|5|U|4481

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain m

eL40