HL_3JAG_128

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UAUUCCCAUG

Length

10 nucleotides

Bulged bases

3JAG|1|9|U|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_128 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.378

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3JAG|1|9|U|1112
3JAG|1|9|A|1113
3JAG|1|9|U|1114
3JAG|1|9|U|1115
3JAG|1|9|C|1116
3JAG|1|9|C|1117
3JAG|1|9|C|1118
3JAG|1|9|A|1119
3JAG|1|9|U|1120
3JAG|1|9|G|1121

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain bb

eS27