HL_3JAH_001

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GUAGCGGUUAUC

Length

12 nucleotides

Bulged bases

3JAH|1|2|C|16, 3JAH|1|2|G|18, 3JAH|1|2|G|19, 3JAH|1|2|U|20|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80634.1

Basepair signature

cWW-cWW-R

Number of instances in this motif group

2

Unit IDs

3JAH|1|2|G|12
3JAH|1|2|U|13
3JAH|1|2|A|14
3JAH|1|2|G|15
3JAH|1|2|C|16
3JAH|1|2|G|18
3JAH|1|2|G|19
3JAH|1|2|U|20
3JAH|1|2|U|20|||A
3JAH|1|2|A|21
3JAH|1|2|U|22
3JAH|1|2|C|23

Current chains

Chain 2

tRNA(Val)

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

uL5

Chain o

eL42