HL_3JAH_069

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAH_069 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1224

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAH|1|5|C|4417
3JAH|1|5|G|4418
3JAH|1|5|U|4419
3JAH|1|5|U|4420
3JAH|1|5|C|4421
3JAH|1|5|A|4422
3JAH|1|5|U|4423
3JAH|1|5|A|4424
3JAH|1|5|G|4425

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

uL16

Chain ii

eRF1

Chain m

eL40