HL_3JAH_117

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

3JAH|1|9|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAH_117 not in the Motif Atlas

Homologous match to HL_4V88_219

Geometric discrepancy: 0.2025

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

3JAH|1|9|A|1614
3JAH|1|9|U|1615
3JAH|1|9|U|1616
3JAH|1|9|G|1617
3JAH|1|9|C|1618
3JAH|1|9|A|1619
3JAH|1|9|A|1620
3JAH|1|9|U|1621
3JAH|1|9|U|1622
3JAH|1|9|A|1623
3JAH|1|9|U|1624
3JAH|1|9|U|1625

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain SS

uS13

Chain dd

uS14