3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GGUAAACUCC
Length
10 nucleotides
Bulged bases
3JAI|1|5|G|315, 3JAI|1|5|U|316
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_015 not in the Motif Atlas
Geometric match to HL_4QLM_002
Geometric discrepancy: 0.2599
The information below is about HL_4QLM_002
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_77600.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

3JAI|1|5|G|314
3JAI|1|5|G|315
3JAI|1|5|U|316
3JAI|1|5|A|317
3JAI|1|5|A|318
3JAI|1|5|A|319
3JAI|1|5|C|320
3JAI|1|5|U|321
3JAI|1|5|C|322
3JAI|1|5|C|323

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain L
eL13
Chain N
eL15
Chain a
uL15
Chain i
eL36
Chain o
eL42

Coloring options:


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