HL_3JAI_028

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

3JAI|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_028 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1165

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAI|1|5|G|1627
3JAI|1|5|C|1628
3JAI|1|5|G|1629
3JAI|1|5|A|1630
3JAI|1|5|A|1631
3JAI|1|5|A|1632
3JAI|1|5|G|1633
3JAI|1|5|A|1634
3JAI|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

eL15

Chain j

eL37