HL_3JAI_029

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

3JAI|1|5|C|1676, 3JAI|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_029 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2205

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

3JAI|1|5|C|1675
3JAI|1|5|C|1676
3JAI|1|5|U|1677
3JAI|1|5|C|1678
3JAI|1|5|A|1679
3JAI|1|5|G|1680

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain a

uL15

Chain b

eL29

Chain o

eL42