HL_3JAI_070

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AAGCAGAAU

Length

9 nucleotides

Bulged bases

3JAI|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_070 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.3535

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAI|1|5|A|4473
3JAI|1|5|A|4474
3JAI|1|5|G|4475
3JAI|1|5|C|4476
3JAI|1|5|A|4477
3JAI|1|5|G|4478
3JAI|1|5|A|4479
3JAI|1|5|A|4480
3JAI|1|5|U|4481

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain m

eL40