HL_3JAI_091

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

3JAI|1|9|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_091 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.2747

The information below is about HL_6UFM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04642.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3JAI|1|9|G|377
3JAI|1|9|U|378
3JAI|1|9|C|379
3JAI|1|9|G|380
3JAI|1|9|C|381
3JAI|1|9|C|382
3JAI|1|9|G|383
3JAI|1|9|U|384
3JAI|1|9|G|385
3JAI|1|9|C|386
3JAI|1|9|C|387

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

eS8

Chain LL

uS17