HL_6UFM_001

3D structure

PDB id

6UFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cocrystal Structure of the Nocardia farcinica ileS T-box riboswitch in complex with its cognate tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.82 Å

Loop

Sequence

CAGGCGGUUAG

Length

11 nucleotides

Bulged bases

6UFM|1|A|G|16, 6UFM|1|A|C|17, 6UFM|1|A|G|18, 6UFM|1|A|G|19, 6UFM|1|A|U|20, 6UFM|1|A|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6UFM|1|A|C|13
6UFM|1|A|A|14
6UFM|1|A|G|15
6UFM|1|A|G|16
6UFM|1|A|C|17
6UFM|1|A|G|18
6UFM|1|A|G|19
6UFM|1|A|U|20
6UFM|1|A|U|21
6UFM|1|A|A|22
6UFM|1|A|G|23

Current chains

Chain A

RNA (77-MER)

Nearby chains