3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
3JAI|1|9|G|451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_093 not in the Motif Atlas
Homologous match to HL_4V88_195
Geometric discrepancy: 0.0927
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

3JAI|1|9|C|441
3JAI|1|9|C|442
3JAI|1|9|U|443
3JAI|1|9|G|444
3JAI|1|9|A|445
3JAI|1|9|G|446
3JAI|1|9|A|447
3JAI|1|9|A|448
3JAI|1|9|A|449
3JAI|1|9|C|450
3JAI|1|9|G|451
3JAI|1|9|G|452

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain EE
eS4
Chain GG
eS6
Chain II
eS8
Chain YY
eS24

Coloring options:


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