3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
AGGUGAAAUU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_104 not in the Motif Atlas
Homologous match to HL_4V88_206
Geometric discrepancy: 0.1264
The information below is about HL_4V88_206
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
14

Unit IDs

3JAI|1|9|A|957
3JAI|1|9|G|958
3JAI|1|9|G|959
3JAI|1|9|U|960
3JAI|1|9|G|961
3JAI|1|9|A|962
3JAI|1|9|A|963
3JAI|1|9|A|964
3JAI|1|9|U|965
3JAI|1|9|U|966

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain FF
uS7
Chain OO
uS11
Chain hh
mRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.107 s