HL_3JAI_108

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_108 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.2219

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JAI|1|9|G|1141
3JAI|1|9|G|1142
3JAI|1|9|A|1143
3JAI|1|9|A|1144
3JAI|1|9|A|1145
3JAI|1|9|C|1146

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain WW

uS8

Chain aa

eS26