3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GUGAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_120 not in the Motif Atlas
Homologous match to HL_4V88_222
Geometric discrepancy: 0.1295
The information below is about HL_4V88_222
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

3JAI|1|9|G|1847
3JAI|1|9|U|1848
3JAI|1|9|G|1849
3JAI|1|9|A|1850
3JAI|1|9|A|1851
3JAI|1|9|C|1852

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain n
eL41

Coloring options:


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