HL_3JAJ_004

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGUGGCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_004 not in the Motif Atlas

Geometric match to HL_1E8O_001

Geometric discrepancy: 0.144

The information below is about HL_1E8O_001

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3JAJ|1|4|G|10
3JAJ|1|4|G|11
3JAJ|1|4|U|12
3JAJ|1|4|G|13
3JAJ|1|4|G|14
3JAJ|1|4|C|15
3JAJ|1|4|G|16
3JAJ|1|4|C|17

Current chains

Chain 4

SRP 7S RNA

Nearby chains

Chain K

Ribosomal protein uL11