HL_3JAJ_014

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

3JAJ|1|5|G|232, 3JAJ|1|5|U|233, 3JAJ|1|5|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_014 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.2756

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

3JAJ|1|5|G|230
3JAJ|1|5|U|231
3JAJ|1|5|G|232
3JAJ|1|5|U|233
3JAJ|1|5|G|234
3JAJ|1|5|A|235
3JAJ|1|5|G|236
3JAJ|1|5|G|237
3JAJ|1|5|C|238

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

Ribosomal protein uL4

Chain Y

Ribosomal protein uL24