HL_8C3A_007

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8C3A|1|1|G|217, 8C3A|1|1|A|218, 8C3A|1|1|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8C3A|1|1|G|215
8C3A|1|1|U|216
8C3A|1|1|G|217
8C3A|1|1|A|218
8C3A|1|1|G|219
8C3A|1|1|A|220
8C3A|1|1|A|221
8C3A|1|1|U|222
8C3A|1|1|C|223

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal protein L24

Chain l

60S ribosomal protein L4-B