HL_3JAJ_021
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 3JAJ|1|5|C|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAJ_021 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.209
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
3JAJ|1|5|U|1317
3JAJ|1|5|C|1318
3JAJ|1|5|U|1319
3JAJ|1|5|U|1320
3JAJ|1|5|G|1321
3JAJ|1|5|A|1322
3JAJ|1|5|A|1323
3JAJ|1|5|A|1324
3JAJ|1|5|C|1325
3JAJ|1|5|A|1326
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein uL3
- Chain a
- Ribosomal protein uL15
- Chain e
- Ribosomal protein eL32
Coloring options: